An integrated development environment for R and Python, with a console, syntax-highlighting editor that supports direct code execution, and tools for plotting, history, debugging and workspace management.
TOOLS
JupyterHub brings the power of notebooks to groups of users. It gives users access to computational environments and resources without burdening the users with installation and maintenance tasks.
A web-based platform for data intensive biomedical. Galaxy server aids in reproducibility and building of common workflows that can be shared among various researchers
Slurm is an open source, fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters.
The Environment Modules package is a tool that simplify shell initialization and lets users easily modify their environment during the session with modulefiles.Each modulefile contains the information needed to configure the shell for an application.replace the shared modulefiles
This is a web based application that interfaces samples available at I.C.I.P.E and acts as an intermediate tool for data management and laboratory information management system for I.C.I.P.E.
Documentations
Software Guides and Tutorials
At icipe, we host a serveral tools, pipelines and Platforms for Genomic data analysis. We will make use of this repo to provide anguide on how to run graphical software's, Pipelines and tutorials on sample use cases of analysis on the HPC
Getting Started
Getting started using HPC for Research
Full Documentation
If your documentation is very long you can host the full docs page (including FAQ etc) on GitHub and provide a Call to Action button below to direct users there.
Funders
